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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10831557_10831913_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10831557 - 10831913
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATAAT
U12 Branch Point Sequence:
TGAGCCTGAAAT
Flanking Amino Acid:
ATVSLGKEVNEILSACWSFD
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
63.8
0.34
1.2
64.1
39.8
Major PPT
80
0.67
0.9
73.7
36.2
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
56.5
0.28
1.7
72.39
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016087
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016806
10828537 - 10832051
3515