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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10849015_10849901_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10849015 - 10849901
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTTCTATATCT
Flanking Amino Acid:
FRQNLQSLKSSRVTILVKLS
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
77.7
0.62
0.9
71.1
39
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
65.5
0.57
1.9
88.83
36

Associated Gene:

Gene:
NOS2
Ensembl Gene ID:
ENSAPLG00000016213
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038573
10842806 - 10863505
20700
ENSAPLT00000016969
10842287 - 10867331
25045