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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10851246_10851339_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10851246 - 10851339
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTATTTGTATCT
Flanking Amino Acid:
LTLKLLKKKIRYAVFGLGST
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
82.5
0.73
0.8
76.8
31.4
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
49.5
0.04
2.2
75.72
41.5

Associated Gene:

Gene:
NOS2
Ensembl Gene ID:
ENSAPLG00000016213
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038573
10842806 - 10863505
20700
ENSAPLT00000016969
10842287 - 10867331
25045