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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10854087_10854847_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10854087 - 10854847
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTCACTT
Flanking Amino Acid:
CDVQRYNILKEVGRRMGLET
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75.1
36
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.4
0.75
0.7
78.6
28.9
Minor 5ss
48.5
-0.1
2.8
68
43.2
Minor BPS
50.4
0.09
1.8
70.72
41.5

Associated Gene:

Gene:
NOS2
Ensembl Gene ID:
ENSAPLG00000016213
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038573
10842806 - 10863505
20700
ENSAPLT00000016969
10842287 - 10867331
25045