Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10856765_10857250_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10856765 - 10857250

Intron Length:

486

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACCTAT

5'SS Class:

major

3'SS Sequence:

GGGAAACATATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

TTTTCTTCACCT

Flanking Amino Acid:

IGRIQWSNLQVFDARDCKTA

Intron Amino Acid Position:

208

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

1.2

74.9

38.1

Major BPS

71.6

0.54

33.1

Major PPT

48.6

-0

36.7

39.7

Minor 5ss

53.8

0.13

2.6

73.2

43.7

Minor BPS

66.5

0.6

1.8

87.98

37.6

Associated Gene:

Gene:

NOS2

Ensembl Gene ID:

ENSAPLG00000016213

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038573

10842806 - 10863505

20700

ENSAPLT00000016969

10842287 - 10867331

25045