About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10859603_10859691_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10859603 - 10859691
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGCTTTTAACA
Flanking Amino Acid:
LDTLHLTAKEVINCRTKACQ
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.5
0.8
0.8
77.2
41.6
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
72
0.69
1.2
76.03
35.3

Associated Gene:

Gene:
NOS2
Ensembl Gene ID:
ENSAPLG00000016213
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038573
10842806 - 10863505
20700
ENSAPLT00000016969
10842287 - 10867331
25045