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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10863506_10867221_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10863506 - 10867221
Intron Length:
3716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TAGCCCTGGAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
75.6
0.58
0.9
68.9
37.2
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
49
0
1.8
66.44
44

Associated Gene:

Gene:
NOS2
Ensembl Gene ID:
ENSAPLG00000016213
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016969
10842287 - 10867331
25045