Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10882726_10883858_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10882726 - 10883858

Intron Length:

1133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TCAAATGTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCAAAT

U12 Branch Point Sequence:

ATCAGTGTAACA

Flanking Amino Acid:

RQHYRHAIRQSFKVHADEDN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

80.3

26.9

Major BPS

68.5

0.46

73.3

28.9

Major PPT

68.9

0.43

61.4

43.9

Minor 5ss

28.3

-2.5

2.8

33.7

41.9

Minor BPS

44.3

-0.4

2.3

57.66

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002879

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002910

10881412 - 10883984

2573