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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10967734_10968244_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10967734 - 10968244
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
TGCTTCCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAACTTTTAAAA
Flanking Amino Acid:
FPIAAYAFIKGGCKWIRTPA
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.6
0.58
0.9
69.4
36
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
54
0.12
1.3
58.52
33.9

Associated Gene:

Gene:
TMEM97
Ensembl Gene ID:
ENSAPLG00000023160
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017791
10967179 - 10969495
2317