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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10970316_10970803_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10970316 - 10970803
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TAACCTTTTATA
Flanking Amino Acid:
LIAEKKMQLERYRIEYETLC
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
83.9
30.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
87.8
0.85
0.7
85.4
28.9
Minor 5ss
44.3
-0.6
3.1
64.1
47.4
Minor BPS
53.7
0.11
1.6
62.71
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008653
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008989
10970234 - 10975585
5352