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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10970908_10971278_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10970908 - 10971278
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAA
U12 Branch Point Sequence:
TCTGTTTTGACA
Flanking Amino Acid:
AKAAESEKMKAIGARNLLKS
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
78.7
0.64
1
75.5
38.3
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
62.2
0.38
1.4
68.82
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008653
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008989
10970234 - 10975585
5352