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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10973772_10975644_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10973772 - 10975644
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGGAA
5'SS Class:
major
3'SS Sequence:
GGTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
GGTCATTGAAAT
Flanking Amino Acid:
GRMEVLTDKEGWILIDRCGK
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.8
37.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
80.8
0.69
0.9
77.1
41.6
Minor 5ss
26.8
-2.7
3.7
37.2
47.4
Minor BPS
46.8
-0.1
1.7
62.95
40

Associated Gene:

Gene:
TNFAIP1
Ensembl Gene ID:
ENSAPLG00000003337
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003416
10971828 - 10980312
8485