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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10979918_10980093_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10979918 - 10980093
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGGTT
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
ATGTATAGATCA
Flanking Amino Acid:
VYATEKKQTKVEFPEARIYE
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.4
38.2
Major BPS
71.4
0.53
1
67
39.8
Major PPT
92
0.94
0.7
88.3
28.9
Minor 5ss
41.3
-1
3.7
64.1
47.4
Minor BPS
40.9
-0.6
1.9
52.65
39.1

Associated Gene:

Gene:
TNFAIP1
Ensembl Gene ID:
ENSAPLG00000003337
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003416
10971828 - 10980312
8485