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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_10991449_11004672_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10991449 - 11004672
Intron Length:
13224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATGGC
5'SS Class:
major
3'SS Sequence:
CCCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TACCCATGAATT
Flanking Amino Acid:
EDSSHIIALCGVVEACLLHM
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.6
38.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
84.6
0.78
0.7
78.9
26.8
Minor 5ss
32.5
-2
3.3
40.6
40.8
Minor BPS
51.4
0.12
1.7
69.18
41.3

Associated Gene:

Gene:
SGSM2
Ensembl Gene ID:
ENSAPLG00000003532
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043279
10991385 - 11030033
38649
ENSAPLT00000027528
10991385 - 11111242
119858
ENSAPLT00000003639
10991373 - 11030033
38661