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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11004836_11007504_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11004836 - 11007504
Intron Length:
2669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTACTTTATCT
Flanking Amino Acid:
VQELQQQVESRKSQPNGQEP
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
88.4
0.86
0.7
83.7
24.3
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
71.6
0.76
1.6
88.62
36.4

Associated Gene:

Gene:
SGSM2
Ensembl Gene ID:
ENSAPLG00000003532
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043279
10991385 - 11030033
38649
ENSAPLT00000027528
10991385 - 11111242
119858
ENSAPLT00000003639
10991373 - 11030033
38661