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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11012062_11012633_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11012062 - 11012633
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTGTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTCTGTGAACA
Flanking Amino Acid:
YGKNNVLVQPKDDLEAIPGY
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
75
0.62
1.1
77.2
36
Major PPT
72.7
0.51
1
69.2
40.7
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
53.1
0.09
2.2
73.43
38.1

Associated Gene:

Gene:
SGSM2
Ensembl Gene ID:
ENSAPLG00000003532
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003639
10991373 - 11030033
38661
ENSAPLT00000043279
10991385 - 11030033
38649
ENSAPLT00000027528
10991385 - 11111242
119858