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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11012759_11014159_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11012759 - 11014159
Intron Length:
1401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTCATT
5'SS Class:
major
3'SS Sequence:
CCTTCCCTATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTCTCCTGCACT
Flanking Amino Acid:
GTLGDSELEKSVYWDYALIV
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.6
41.7
Major BPS
54
0.1
1
59.7
32.6
Major PPT
71.5
0.49
0.8
70.7
28.8
Minor 5ss
44
-0.7
3.2
66.1
45.1
Minor BPS
64.7
0.54
2
84.75
41.8

Associated Gene:

Gene:
SGSM2
Ensembl Gene ID:
ENSAPLG00000003532
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043279
10991385 - 11030033
38649
ENSAPLT00000027528
10991385 - 11111242
119858
ENSAPLT00000003639
10991373 - 11030033
38661