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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11014228_11015980_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11014228 - 11015980
Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGCATA
5'SS Class:
major
3'SS Sequence:
TCCTTTGCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
ACAGTGTGGACT
Flanking Amino Acid:
QIVCIHCHQQQSRWTLVLVS
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.3
78
38.6
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
73.2
0.52
0.9
69.7
35.4
Minor 5ss
44.3
-0.6
2.8
56.9
41
Minor BPS
40.9
-0.6
2.1
53.65
42

Associated Gene:

Gene:
SGSM2
Ensembl Gene ID:
ENSAPLG00000003532
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003639
10991373 - 11030033
38661