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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11016142_11016700_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11016142 - 11016700
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCCT
5'SS Class:
major
3'SS Sequence:
TTACTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGAAT
U12 Branch Point Sequence:
GGAACATTACTT
Flanking Amino Acid:
EPPLWSQQGKGKVFPKLRKR
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
60
44.4
Major BPS
58
0.2
1.3
67.7
36.5
Major PPT
80.6
0.69
0.8
74
36.5
Minor 5ss
32.4
-2
3.5
49
46.7
Minor BPS
46.5
-0.1
1.9
60.78
42.3

Associated Gene:

Gene:
SGSM2
Ensembl Gene ID:
ENSAPLG00000003532
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043279
10991385 - 11030033
38649
ENSAPLT00000027528
10991385 - 11111242
119858
ENSAPLT00000003639
10991373 - 11030033
38661