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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11016831_11021874_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11016831 - 11021874
Intron Length:
5044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TGTTTTTTGTTT
Flanking Amino Acid:
IIYPGHKHDNNTSEVIEMQG
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
79.6
0.67
0.8
73.8
36.8
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
44.5
-0.3
3.4
74.33
37.3

Associated Gene:

Gene:
SGSM2
Ensembl Gene ID:
ENSAPLG00000003532
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003639
10991373 - 11030033
38661