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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11023250_11023699_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11023250 - 11023699
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ACAACTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTCTCACAACT
Flanking Amino Acid:
VWSKYQKDRKNYKELELLRR
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
62.8
0.29
1
54.6
40.5
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
58.4
0.34
1.8
82.84
37.7

Associated Gene:

Gene:
SGSM2
Ensembl Gene ID:
ENSAPLG00000003532
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027528
10991385 - 11111242
119858
ENSAPLT00000003639
10991373 - 11030033
38661
ENSAPLT00000043279
10991385 - 11030033
38649