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Intron Name: Anas_platyrhynchos_platyrhynchos_20_11023829_11025144_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11023829 - 11025144

Intron Length:

1316

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTGTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTATTAT

U12 Branch Point Sequence:

AGTGTATTATCT

Flanking Amino Acid:

FGMAKKEMDKVDEDIALRYQ

Intron Amino Acid Position:

572

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.1

1.11

0.7

89.8

22.5

Major BPS

0.42

1.3

60.1

46.3

Major PPT

79.5

0.66

0.9

73.2

37.2

Minor 5ss

-1.6

2.6

43.5

43.6

Minor BPS

48.2

-0

1.9

67.88

42.8

Associated Gene:

Gene:

SGSM2

Ensembl Gene ID:

ENSAPLG00000003532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043279

10991385 - 11030033

38649

ENSAPLT00000027528

10991385 - 11111242

119858

ENSAPLT00000003639

10991373 - 11030033

38661