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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11025328_11025563_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11025328 - 11025563
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCCCACCCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
IHRDSTISNDVFISVDEADS
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
54.2
0.09
1
52.4
30.5
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
SGSM2
Ensembl Gene ID:
ENSAPLG00000003532
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043279
10991385 - 11030033
38649
ENSAPLT00000027528
10991385 - 11111242
119858
ENSAPLT00000003639
10991373 - 11030033
38661