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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11028026_11028598_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11028026 - 11028598
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TAATGTTTAACA
Flanking Amino Acid:
HFANMRSLIQILDSELFELM
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
81
0.7
0.8
78.8
34.4
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
65.4
0.48
1.7
73.3
38.4

Associated Gene:

Gene:
SGSM2
Ensembl Gene ID:
ENSAPLG00000003532
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003639
10991373 - 11030033
38661
ENSAPLT00000043279
10991385 - 11030033
38649
ENSAPLT00000027528
10991385 - 11111242
119858