Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11028696_11028964_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11028696 - 11028964

Intron Length:

269

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATAATG

5'SS Class:

strong_major

3'SS Sequence:

TATTCCCATTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TAATGTTTATTC

Flanking Amino Acid:

YRWFLLDFKRELLYEDVFTV

Intron Amino Acid Position:

906

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

77.4

37.4

Major BPS

84.4

0.85

1.1

34.5

Major PPT

77.8

0.63

0.9

34.7

Minor 5ss

37.2

-1.5

49.1

46.7

Minor BPS

48.5

-0.1

1.9

59.87

39.8

Associated Gene:

Gene:

SGSM2

Ensembl Gene ID:

ENSAPLG00000003532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043279

10991385 - 11030033

38649

ENSAPLT00000003639

10991373 - 11030033

38661