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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11132852_11135520_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11132852 - 11135520
Intron Length:
2669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTGGA
5'SS Class:
major
3'SS Sequence:
CTCTTCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTAAATGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
59.7
41.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.8
0.69
0.7
73.3
31.7
Minor 5ss
25.7
-2.8
3.2
30.8
43.2
Minor BPS
47.9
-0
2
74.13
41.3

Associated Gene:

Gene:
PAFAH1B1
Ensembl Gene ID:
ENSAPLG00000024342
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042933
11132706 - 11149148
16443