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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11135734_11137295_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11135734 - 11137295
Intron Length:
1562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGCTGC
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAGAT
U12 Branch Point Sequence:
TATAGCTAAAGA
Flanking Amino Acid:
MVLSQRQRDELNRAIADYLR
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
57.4
42.8
Major BPS
59.6
0.24
1.1
55.4
40.4
Major PPT
89.3
0.88
0.7
88.9
28.2
Minor 5ss
47.1
-0.3
2.9
68.8
42
Minor BPS
45.5
-0.3
2.3
60.95
44.9

Associated Gene:

Gene:
PAFAH1B1
Ensembl Gene ID:
ENSAPLG00000024342
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042933
11132706 - 11149148
16443