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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11139753_11140731_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11139753 - 11140731
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCCATAAACATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
GTCTCTTTAAAA
Flanking Amino Acid:
WTSVIRLQKKVMELESKLNE
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.5
32.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
53.7
0.08
0.9
46.9
33.2
Minor 5ss
32.1
-2
3.1
40.8
45.4
Minor BPS
69.9
0.62
1.4
73.23
38.5

Associated Gene:

Gene:
PAFAH1B1
Ensembl Gene ID:
ENSAPLG00000024342
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042933
11132706 - 11149148
16443