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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11142863_11143627_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11142863 - 11143627
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TACCACTTAATA
Flanking Amino Acid:
QGFECIRTMHGHDHNVSSVA
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.4
33.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
83
0.74
0.8
81.2
36.5
Minor 5ss
38.5
-1.3
3.4
52.2
46
Minor BPS
61.9
0.37
1.5
67.23
38.9

Associated Gene:

Gene:
PAFAH1B1
Ensembl Gene ID:
ENSAPLG00000024342
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042933
11132706 - 11149148
16443