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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11143731_11144489_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11143731 - 11144489
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCTGTTTTAAAT
Flanking Amino Acid:
KTIKMWEVQTGYCVKTFTGH
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
68.7
0.42
1
66.4
38.7
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
62.7
0.48
1.5
75.95
41.3

Associated Gene:

Gene:
PAFAH1B1
Ensembl Gene ID:
ENSAPLG00000024342
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042933
11132706 - 11149148
16443