About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11144719_11146105_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11144719 - 11146105
Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGTTT
5'SS Class:
major
3'SS Sequence:
TAATTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
TATGCCATAACT
Flanking Amino Acid:
STISEATGSETKKSGKPGPF
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
79.5
36.8
Major BPS
69
0.47
1
69.9
32.6
Major PPT
82.8
0.74
0.8
77.8
36
Minor 5ss
48.2
-0.2
3.2
73.2
43.7
Minor BPS
69.6
0.69
1.7
86.46
39

Associated Gene:

Gene:
PAFAH1B1
Ensembl Gene ID:
ENSAPLG00000024342
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042933
11132706 - 11149148
16443