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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11147004_11148965_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11147004 - 11148965
Intron Length:
1962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCATTCTTAACA
Flanking Amino Acid:
NAHEHFVTSLDFHKTAPYVV
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85.1
0.79
0.7
80
25.5
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
79.5
0.92
1.1
79.69
36.4

Associated Gene:

Gene:
PAFAH1B1
Ensembl Gene ID:
ENSAPLG00000024342
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042933
11132706 - 11149148
16443