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Intron Name: Anas_platyrhynchos_platyrhynchos_20_1114873_1132377_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1114873 - 1132377

Intron Length:

17505

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCATTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

TTTTCTTTCATT

Flanking Amino Acid:

AIIMQRLDMDGDGQVDFDEF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

80.9

33.1

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

85.9

0.81

0.8

77.9

35.2

Minor 5ss

33.4

-1.9

2.8

44.7

42.7

Minor BPS

73.9

0.83

1.6

91.31

32.6

Associated Gene:

Gene:

CALN1

Ensembl Gene ID:

ENSAPLG00000015773

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023343

1054039 - 1179422

125384

ENSAPLT00000018456

1062585 - 1185379

122795

ENSAPLT00000016435

1075116 - 1185379

110264