Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11163632_11163777_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11163632 - 11163777

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAGACC

5'SS Class:

major

3'SS Sequence:

TGTATTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

TATTTACTATGT

Flanking Amino Acid:

FQSGQAKVQQGFLKEGCELI

Intron Amino Acid Position:

1001

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

40.4

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

86.9

0.83

0.8

84.7

35.8

Minor 5ss

31.8

-2.1

3.4

43.8

43.7

Minor BPS

42.8

-0.4

2.3

66.69

43.6

Associated Gene:

Gene:

CLUH

Ensembl Gene ID:

ENSAPLG00000004181

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020919

11157051 - 11183544

26494

ENSAPLT00000004369

11157297 - 11184272

26976