Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_11172854_11173549_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11172854 - 11173549

Intron Length:

696

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTTG

5'SS Class:

strong_major

3'SS Sequence:

CAACTGTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAC

U12 Branch Point Sequence:

CCTTCCTTACCT

Flanking Amino Acid:

RLLRERAIFKVHSDFTAAAT

Intron Amino Acid Position:

395

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

1.1

78.8

38.3

Major BPS

68.9

0.47

59.6

38.6

Major PPT

68.3

0.41

42.6

Minor 5ss

49.4

-0

2.5

66.9

44.4

Minor BPS

0.77

1.7

83.33

44.1

Associated Gene:

Gene:

CLUH

Ensembl Gene ID:

ENSAPLG00000004181

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020919

11157051 - 11183544

26494

ENSAPLT00000004369

11157297 - 11184272

26976