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Intron Name: Anas_platyrhynchos_platyrhynchos_20_1179373_1185251_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1179373 - 1185251

Intron Length:

5879

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGAG

5'SS Class:

strong_major

3'SS Sequence:

GTCTTTCCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATGAT

U12 Branch Point Sequence:

GATGCTATGATC

Flanking Amino Acid:

NSGNCQTEFEVHAQKQNRQT

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.8

71.2

34.6

Major BPS

72.3

0.55

1.1

63.4

42.8

Major PPT

82.8

0.74

0.8

77.3

31.5

Minor 5ss

24.3

-3

3.1

28.4

43.8

Minor BPS

47.4

-0.2

1.6

55.74

36.8

Associated Gene:

Gene:

CALN1

Ensembl Gene ID:

ENSAPLG00000015773

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018456

1062585 - 1185379

122795

ENSAPLT00000016435

1075116 - 1185379

110264