About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1224985_1225241_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1224985 - 1225241
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTACAGAT
5'SS Class:
major
3'SS Sequence:
TCTGTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AATTTTTTAACT
Flanking Amino Acid:
THSIQSCYLKNGAILNKGTG
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.3
67.2
38.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
74.1
0.54
0.9
71.2
38.6
Minor 5ss
34
-1.8
3.3
47.9
47.7
Minor BPS
79.4
1
1
87.09
31.7

Associated Gene:

Gene:
GALNT17
Ensembl Gene ID:
ENSAPLG00000004368
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004480
1224856 - 1435825
210970