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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1224985_1225631_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1224985 - 1225631
Intron Length:
647

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTAC
5'SS Class:
major
3'SS Sequence:
TCTGTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
AATTTTTTAACT
Flanking Amino Acid:
SLHKRWNFIQNGAILNKGTG
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
72.2
33.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
74.1
0.54
0.9
71.2
38.6
Minor 5ss
42.9
-0.8
2.4
52.8
44.4
Minor BPS
79.4
1
1
87.09
31.7

Associated Gene:

Gene:
GALNT17
Ensembl Gene ID:
ENSAPLG00000004368
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016510
1224856 - 1387250
162395