Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1225365_1225631_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1225365 - 1225631

Intron Length:

267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTTAC

5'SS Class:

major

3'SS Sequence:

TTGTTTCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCAGAT

U12 Branch Point Sequence:

TGTTTCTTACAG

Flanking Amino Acid:

SLHKRWNFIQITYGEIHENT

Intron Amino Acid Position:

557

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

72.2

33.5

Major BPS

61.5

0.29

1.1

56.9

40.5

Major PPT

89.2

0.88

0.7

84.2

30.9

Minor 5ss

42.9

-0.8

2.4

52.8

44.4

Minor BPS

57.3

0.09

1.8

64.96

42.7

Associated Gene:

Gene:

GALNT17

Ensembl Gene ID:

ENSAPLG00000004368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004480

1224856 - 1435825

210970