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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1235397_1236615_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1235397 - 1236615
Intron Length:
1219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTTTTACA
Flanking Amino Acid:
RYNNTVAYGELRNNKAKDVC
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.5
0.96
0.7
87.8
29.2
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
65.9
0.49
1.6
75.62
35.9

Associated Gene:

Gene:
GALNT17
Ensembl Gene ID:
ENSAPLG00000004368
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004480
1224856 - 1435825
210970
ENSAPLT00000016510
1224856 - 1387250
162395