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Intron Name: Anas_platyrhynchos_platyrhynchos_20_1236754_1240064_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1236754 - 1240064

Intron Length:

3311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGGCA

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATGAT

U12 Branch Point Sequence:

CATTCAGTGATA

Flanking Amino Acid:

VYIAWNLPLENPGIDIGDVS

Intron Amino Acid Position:

423

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.73

68.4

36.4

Major BPS

75.8

0.64

65.8

Major PPT

85.8

0.81

0.8

83.6

31.4

Minor 5ss

35.6

-1.6

3.5

47.4

48.2

Minor BPS

46.1

-0.3

2.2

59.91

40.3

Associated Gene:

Gene:

GALNT17

Ensembl Gene ID:

ENSAPLG00000004368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016510

1224856 - 1387250

162395

ENSAPLT00000004480

1224856 - 1435825

210970