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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1509599_1514598_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1509599 - 1514598
Intron Length:
5000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATGCTTTAATT
Flanking Amino Acid:
DSSVSKDDKERESIEKRHSS
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.8
39.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.4
0.84
0.6
81
31
Minor 5ss
31.7
-2.1
3.1
39.5
46
Minor BPS
68
0.64
1.4
76.34
41.1

Associated Gene:

Gene:
AUTS2
Ensembl Gene ID:
ENSAPLG00000004514
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004650
1508359 - 1742960
234602
ENSAPLT00000044887
1508359 - 2025780
517422
ENSAPLT00000038867
1508359 - 2025780
517422
ENSAPLT00000031576
1508359 - 2025780
517422
ENSAPLT00000026322
1508359 - 2025780
517422