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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1514822_1515733_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1514822 - 1515733
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTCACCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAAAC
Flanking Amino Acid:
AFGGLGNPTVTPNSMFGHKD
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
73
31.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
77.8
0.62
0.9
74.1
35.1
Minor 5ss
32.4
-2
2.7
38.3
34.3
Minor BPS
81.7
0.97
1.2
87.41
28.5

Associated Gene:

Gene:
AUTS2
Ensembl Gene ID:
ENSAPLG00000004514
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026322
1508359 - 2025780
517422
ENSAPLT00000004650
1508359 - 1742960
234602
ENSAPLT00000044887
1508359 - 2025780
517422
ENSAPLT00000038867
1508359 - 2025780
517422
ENSAPLT00000031576
1508359 - 2025780
517422