About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1515818_1517640_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1515818 - 1517640
Intron Length:
1823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CATTGGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTGTTTTCATT
Flanking Amino Acid:
SNFLNPAAHLEPFNRPASFS
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
100
1.24
0.5
100
0
Major PPT
76.2
0.59
1
68.9
41.6
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
50.7
0.1
1.8
71.21
40.9

Associated Gene:

Gene:
AUTS2
Ensembl Gene ID:
ENSAPLG00000004514
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038867
1508359 - 2025780
517422
ENSAPLT00000031576
1508359 - 2025780
517422
ENSAPLT00000004650
1508359 - 1742960
234602
ENSAPLT00000044887
1508359 - 2025780
517422