About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1525615_1526915_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1525615 - 1526915
Intron Length:
1301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
ATGACATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTACTCCTAACC
Flanking Amino Acid:
GSLQGAFQPKTSNPIDVAAR
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
65.7
0.35
1
55.8
44.1
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
62
0.36
1.7
73.54
36.5

Associated Gene:

Gene:
AUTS2
Ensembl Gene ID:
ENSAPLG00000004514
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038867
1508359 - 2025780
517422
ENSAPLT00000031576
1508359 - 2025780
517422
ENSAPLT00000026322
1508359 - 2025780
517422
ENSAPLT00000004650
1508359 - 1742960
234602
ENSAPLT00000044887
1508359 - 2025780
517422