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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1527012_1531027_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1527012 - 1531027
Intron Length:
4016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTTTGTTACAG
Flanking Amino Acid:
TKVDPFYRHSLFHSYPPAVS
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
76.9
34.5
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
88.3
0.86
0.8
83.2
31.9
Minor 5ss
42.7
-0.8
3
59
45.5
Minor BPS
47.5
-0.3
2.4
63.72
44.3

Associated Gene:

Gene:
AUTS2
Ensembl Gene ID:
ENSAPLG00000004514
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026322
1508359 - 2025780
517422
ENSAPLT00000004650
1508359 - 1742960
234602
ENSAPLT00000044887
1508359 - 2025780
517422
ENSAPLT00000031576
1508359 - 2025780
517422