Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1527012_1531532_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1527012 - 1531532

Intron Length:

4521

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGCGTACC

5'SS Class:

major

3'SS Sequence:

CTTTTTGTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTCAT

U12 Branch Point Sequence:

TTTTTGTTACAG

Flanking Amino Acid:

AIMPTPAPPMLFHSYPPAVS

Intron Amino Acid Position:

407

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.58

67.8

37.3

Major BPS

79.8

0.74

0.9

81.3

29.9

Major PPT

88.3

0.86

0.8

83.2

31.9

Minor 5ss

30.6

-2.2

2.8

34.3

35.1

Minor BPS

47.5

-0.3

2.4

63.72

44.3

Associated Gene:

Gene:

AUTS2

Ensembl Gene ID:

ENSAPLG00000004514

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038867

1508359 - 2025780

517422