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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1531073_1531532_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1531073 - 1531532
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTACC
5'SS Class:
major
3'SS Sequence:
GATCCCTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGTGCTTTGATC
Flanking Amino Acid:
AIMPTPAPPMFDKYPTKVDP
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
67.8
37.3
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
76.7
0.6
0.9
69.4
36.4
Minor 5ss
30.6
-2.2
2.8
34.3
35.1
Minor BPS
63.8
0.42
1.3
69.72
36.4

Associated Gene:

Gene:
AUTS2
Ensembl Gene ID:
ENSAPLG00000004514
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031576
1508359 - 2025780
517422
ENSAPLT00000026322
1508359 - 2025780
517422
ENSAPLT00000004650
1508359 - 1742960
234602
ENSAPLT00000044887
1508359 - 2025780
517422