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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1532964_1534517_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1532964 - 1534517
Intron Length:
1554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAACA
Flanking Amino Acid:
NSSSLSLNSLSSSRSSTPAK
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
81.9
0.72
0.9
78.1
34
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
84.1
1.07
1.4
93.02
25.5

Associated Gene:

Gene:
AUTS2
Ensembl Gene ID:
ENSAPLG00000004514
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031576
1508359 - 2025780
517422
ENSAPLT00000026322
1508359 - 2025780
517422
ENSAPLT00000004650
1508359 - 1742960
234602
ENSAPLT00000044887
1508359 - 2025780
517422
ENSAPLT00000038867
1508359 - 2025780
517422