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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_1534996_1579580_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1534996 - 1579580
Intron Length:
44585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
ACACACTGACCT
Flanking Amino Acid:
EKLFNAVTNKDKELGVSALA
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
88.3
0.86
0.8
83.9
31
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
44.8
-0.3
1.9
59.02
43.3

Associated Gene:

Gene:
AUTS2
Ensembl Gene ID:
ENSAPLG00000004514
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031576
1508359 - 2025780
517422
ENSAPLT00000026322
1508359 - 2025780
517422
ENSAPLT00000004650
1508359 - 1742960
234602
ENSAPLT00000044887
1508359 - 2025780
517422
ENSAPLT00000038867
1508359 - 2025780
517422